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End to End Brain Fiber Orientation Estimation Using Deep Learning

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Date Issued:
2017
Abstract/Description:
In this work, we explore the various Brain Neuron tracking techniques, one of the most significant applications of Diffusion Tensor Imaging. Tractography is a non-invasive method to analyze underlying tissue micro-structure. Understanding the structure and organization of the tissues facilitates a diagnosis method to identify any aberrations which can occurwithin tissues due to loss of cell functionalities, provides acute information on the occurrences of brain ischemia or stroke, the mutation of certain neurological diseases such as Alzheimer, multiple sclerosis and so on. Under all these circumstances, accurate localization of the aberrations in efficient manner can help save a life. Following up with the limitations introduced by the current Tractography techniques such as computational complexity, reconstruction errors during tensor estimation and standardization, we aim to elucidate these limitations through our research findings. We introduce an End to End Deep Learning framework which can accurately estimate the most probable likelihood orientation at each voxel along a neuronal pathway. We use Probabilistic Tractography as our baseline model to obtain the training data and which also serve as a Tractography Gold Standard for our evaluations. Through experiments we show that our Deep Network can do a significant improvement over current Tractography implementations by reducing the run-time complexity to a significant new level. Our architecture also allows for variable sized input DWI signals eliminating the need to worry about memory issues as seen with the traditional techniques. The advantageof this architecture is that it is perfectly desirable to be processed on a cloud setup and utilize the existing multi GPU frameworks to perform whole brain Tractography in minutes rather than hours. The proposed method is a good alternative to the current state of the art orientation estimation technique which we demonstrate across multiple benchmarks.
Title: End to End Brain Fiber Orientation Estimation Using Deep Learning.
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Name(s): Puttashamachar, Nandakishore, Author
Bagci, Ulas, Committee Chair
Shah, Mubarak, Committee Member
Rahnavard, Nazanin, Committee Member
Sundaram, Kalpathy, Committee Member
University of Central Florida, Degree Grantor
Type of Resource: text
Date Issued: 2017
Publisher: University of Central Florida
Language(s): English
Abstract/Description: In this work, we explore the various Brain Neuron tracking techniques, one of the most significant applications of Diffusion Tensor Imaging. Tractography is a non-invasive method to analyze underlying tissue micro-structure. Understanding the structure and organization of the tissues facilitates a diagnosis method to identify any aberrations which can occurwithin tissues due to loss of cell functionalities, provides acute information on the occurrences of brain ischemia or stroke, the mutation of certain neurological diseases such as Alzheimer, multiple sclerosis and so on. Under all these circumstances, accurate localization of the aberrations in efficient manner can help save a life. Following up with the limitations introduced by the current Tractography techniques such as computational complexity, reconstruction errors during tensor estimation and standardization, we aim to elucidate these limitations through our research findings. We introduce an End to End Deep Learning framework which can accurately estimate the most probable likelihood orientation at each voxel along a neuronal pathway. We use Probabilistic Tractography as our baseline model to obtain the training data and which also serve as a Tractography Gold Standard for our evaluations. Through experiments we show that our Deep Network can do a significant improvement over current Tractography implementations by reducing the run-time complexity to a significant new level. Our architecture also allows for variable sized input DWI signals eliminating the need to worry about memory issues as seen with the traditional techniques. The advantageof this architecture is that it is perfectly desirable to be processed on a cloud setup and utilize the existing multi GPU frameworks to perform whole brain Tractography in minutes rather than hours. The proposed method is a good alternative to the current state of the art orientation estimation technique which we demonstrate across multiple benchmarks.
Identifier: CFE0007292 (IID), ucf:52156 (fedora)
Note(s): 2017-12-01
M.S.Cp.E.
Engineering and Computer Science, Electrical Engineering and Computer Engineering
Masters
This record was generated from author submitted information.
Subject(s): Diffusion Tensor Imaging -- Tractography -- Brain Neuron Connection -- Deep Learning
Persistent Link to This Record: http://purl.flvc.org/ucf/fd/CFE0007292
Restrictions on Access: campus 2021-06-15
Host Institution: UCF

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